PacBio RS II sequencing - SRA

Submitted by: UNIVERSITY OF SZEGED

Study: Here, we present a large RNA-Seq dataset of Suid alphaherpesvirus, derived from long-read sequencing including PacBio RSII, PacBio Sequel and Oxford Nanopore platforms.

PRJEB24593 • ERP106430 • All experiments • All runs

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Pseudorabies virus (PRV) is an alphaherpesvirus of swine. PRV has a large double-stranded DNA genome and, as the latest investigations have revealed, a very complex transcriptome. Here, we present a large RNA-Seq dataset, derived from long-read sequencing.Pacific Biosciences RSII platform with amplified and non-amplified, Sequel platform with amplified and a Oxford Nanopore's MinION device with direct RNA sequencing, cDNA and CAP selected cDNA sequencing methods were used.

Library:

Name: Suid_herpesvirus_1_KJ717942_GMAP_PolyA-Isoseq-Gel-Selection 8h 2-3kb

Instrument: PacBio RS II

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: Oligo-dT

Layout: SINGLE

Construction protocol: polyA selected fraction of mRNAs and size fractionated using Gel selection 2-3kb

Run	# of Spots	# of Bases	Size	Published
ERR2270762	unavailable			2018-01-30

ID:: 5023171

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